An integrated genomic resource based on Korean cattle (Hanwoo) transcripts

Dajeong Lim; Yong Min Cho; Seung Hwan Lee; Samsun Sung; Jungrye Nam; Duhak Yoon; Younhee Shin; Hye Sun Park; Heebal Kim

doi:10.5713/ajas.2010.90250

An integrated genomic resource based on Korean cattle (Hanwoo) transcripts

Dajeong Lim
, Yong Min Cho
, Seung Hwan Lee
, Samsun Sung
, Jungrye Nam
, Duhak Yoon
, Younhee Shin
, Hye Sun Park
, Heebal Kim

Seoul National University
United States Food and Drug Administration
Insilicogen Inc.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Abstract

We have created a Bovine Genome Database, an integrated genomic resource for Bos taurus, by merging bovine data from various databases and our own data. We produced 55,213 Korean cattle (Hanwoo) ESTs from cDNA libraries from three tissues. We concentrated on genomic information based on Hanwoo transcripts and provided user-friendly search interfaces within the Bovine Genome Database. The genome browser supported alignment results for the various types of data: Hanwoo EST, consensus sequence, human gene, and predicted bovine genes. The database also provides transcript data information, gene annotation, genomic location, sequence and tissue distribution. Users can also explore bovine disease genes based on comparative mapping of homologous genes and can conduct searches centered on genes within user-selected quantitative trait loci (QTL) regions. The Bovine Genome Database can be accessed at http://bgd.nabc.go.kr.

Original language	English
Pages (from-to)	1399-1404
Number of pages	6
Journal	Asian-Australasian Journal of Animal Sciences
Volume	23
Issue number	11
DOIs	https://doi.org/10.5713/ajas.2010.90250
State	Published - Nov 2010

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 3 Good Health and Well-being

Keywords

Bovine
EST
Genome database
Korean cattle (Hanwoo)
Transcript

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10.5713/ajas.2010.90250

Cite this

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title = "An integrated genomic resource based on Korean cattle (Hanwoo) transcripts",

abstract = "We have created a Bovine Genome Database, an integrated genomic resource for Bos taurus, by merging bovine data from various databases and our own data. We produced 55,213 Korean cattle (Hanwoo) ESTs from cDNA libraries from three tissues. We concentrated on genomic information based on Hanwoo transcripts and provided user-friendly search interfaces within the Bovine Genome Database. The genome browser supported alignment results for the various types of data: Hanwoo EST, consensus sequence, human gene, and predicted bovine genes. The database also provides transcript data information, gene annotation, genomic location, sequence and tissue distribution. Users can also explore bovine disease genes based on comparative mapping of homologous genes and can conduct searches centered on genes within user-selected quantitative trait loci (QTL) regions. The Bovine Genome Database can be accessed at http://bgd.nabc.go.kr.",

keywords = "Bovine, EST, Genome database, Korean cattle (Hanwoo), Transcript",

author = "Dajeong Lim and Cho, \{Yong Min\} and Lee, \{Seung Hwan\} and Samsun Sung and Jungrye Nam and Duhak Yoon and Younhee Shin and Park, \{Hye Sun\} and Heebal Kim",

year = "2010",

month = nov,

doi = "10.5713/ajas.2010.90250",

language = "English",

volume = "23",

pages = "1399--1404",

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AU - Cho, Yong Min

AU - Lee, Seung Hwan

AU - Sung, Samsun

AU - Nam, Jungrye

AU - Yoon, Duhak

AU - Shin, Younhee

AU - Park, Hye Sun

AU - Kim, Heebal

PY - 2010/11

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AB - We have created a Bovine Genome Database, an integrated genomic resource for Bos taurus, by merging bovine data from various databases and our own data. We produced 55,213 Korean cattle (Hanwoo) ESTs from cDNA libraries from three tissues. We concentrated on genomic information based on Hanwoo transcripts and provided user-friendly search interfaces within the Bovine Genome Database. The genome browser supported alignment results for the various types of data: Hanwoo EST, consensus sequence, human gene, and predicted bovine genes. The database also provides transcript data information, gene annotation, genomic location, sequence and tissue distribution. Users can also explore bovine disease genes based on comparative mapping of homologous genes and can conduct searches centered on genes within user-selected quantitative trait loci (QTL) regions. The Bovine Genome Database can be accessed at http://bgd.nabc.go.kr.

KW - Bovine

KW - EST

KW - Genome database

KW - Korean cattle (Hanwoo)

KW - Transcript

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DO - 10.5713/ajas.2010.90250

M3 - Article

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JO - Asian-Australasian Journal of Animal Sciences

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ER -

An integrated genomic resource based on Korean cattle (Hanwoo) transcripts

Abstract

UN SDGs

Keywords

Access to Document

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