Characterization of complete chloroplast genome of endemic species of Korea Peninsular, Salvia chanryoenica (Lamiaceae)

Young Ho Ha; Kyoung Su Choi; Kyung Choi

doi:10.1080/23802359.2018.1495115

Characterization of complete chloroplast genome of endemic species of Korea Peninsular, Salvia chanryoenica (Lamiaceae)

Young Ho Ha, Kyoung Su Choi, Kyung Choi

Department of Biology

Korea National Arboretum

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

Abstract

Salvia chanryoenica is an endemic species, which locates on the ridges of mountains in South Korea. In this study, we determined the complete chloroplast (cp) genome sequence of S. chanryoenica; cp genome of S. chanryoenica is 151,689 bp in length and consists of a large (82,903 bp) and small (17,634 bp) single-copy regions, separated by a pair of identical inverted repeats (25,576 bp). This genome contains unique 79 protein-coding genes, 30 tRNA, and 4 rRNA. The gene order and organization of the S. chanryoenica are consistent with those of other Lamiaceae cp genomes. The overall GC content of the whole genome was 37.9%. Phylogenetic tree constructed based on 71 protein-coding genes demonstrated a sister relationship within genus Salvia.

Original language	English
Pages (from-to)	992-993
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	3
Issue number	2
DOIs	https://doi.org/10.1080/23802359.2018.1495115
State	Published - 3 Jul 2018

Keywords

Lamiaceae
Salvia chanryoenica
chloroplast genome
endemic species
phylogenetic analysis

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10.1080/23802359.2018.1495115

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title = "Characterization of complete chloroplast genome of endemic species of Korea Peninsular, Salvia chanryoenica (Lamiaceae)",

abstract = "Salvia chanryoenica is an endemic species, which locates on the ridges of mountains in South Korea. In this study, we determined the complete chloroplast (cp) genome sequence of S. chanryoenica; cp genome of S. chanryoenica is 151,689 bp in length and consists of a large (82,903 bp) and small (17,634 bp) single-copy regions, separated by a pair of identical inverted repeats (25,576 bp). This genome contains unique 79 protein-coding genes, 30 tRNA, and 4 rRNA. The gene order and organization of the S. chanryoenica are consistent with those of other Lamiaceae cp genomes. The overall GC content of the whole genome was 37.9%. Phylogenetic tree constructed based on 71 protein-coding genes demonstrated a sister relationship within genus Salvia.",

keywords = "Lamiaceae, Salvia chanryoenica, chloroplast genome, endemic species, phylogenetic analysis",

author = "Ha, {Young Ho} and Choi, {Kyoung Su} and Kyung Choi",

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doi = "10.1080/23802359.2018.1495115",

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AU - Ha, Young Ho

AU - Choi, Kyoung Su

AU - Choi, Kyung

PY - 2018/7/3

Y1 - 2018/7/3

N2 - Salvia chanryoenica is an endemic species, which locates on the ridges of mountains in South Korea. In this study, we determined the complete chloroplast (cp) genome sequence of S. chanryoenica; cp genome of S. chanryoenica is 151,689 bp in length and consists of a large (82,903 bp) and small (17,634 bp) single-copy regions, separated by a pair of identical inverted repeats (25,576 bp). This genome contains unique 79 protein-coding genes, 30 tRNA, and 4 rRNA. The gene order and organization of the S. chanryoenica are consistent with those of other Lamiaceae cp genomes. The overall GC content of the whole genome was 37.9%. Phylogenetic tree constructed based on 71 protein-coding genes demonstrated a sister relationship within genus Salvia.

AB - Salvia chanryoenica is an endemic species, which locates on the ridges of mountains in South Korea. In this study, we determined the complete chloroplast (cp) genome sequence of S. chanryoenica; cp genome of S. chanryoenica is 151,689 bp in length and consists of a large (82,903 bp) and small (17,634 bp) single-copy regions, separated by a pair of identical inverted repeats (25,576 bp). This genome contains unique 79 protein-coding genes, 30 tRNA, and 4 rRNA. The gene order and organization of the S. chanryoenica are consistent with those of other Lamiaceae cp genomes. The overall GC content of the whole genome was 37.9%. Phylogenetic tree constructed based on 71 protein-coding genes demonstrated a sister relationship within genus Salvia.

KW - Lamiaceae

KW - Salvia chanryoenica

KW - chloroplast genome

KW - endemic species

KW - phylogenetic analysis

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Characterization of complete chloroplast genome of endemic species of Korea Peninsular, Salvia chanryoenica (Lamiaceae)

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Keywords

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