TY - JOUR
T1 - Complete chloroplast genome of two Arabis L. species from Korea and assessment of their phylogenetic relationship in plastome based phylogeny
AU - Tamboli, Asif S.
AU - Kadam, Suhas K.
AU - Youn, Jin Suk
AU - Yang, Ji Young
AU - Pak, Jae Hong
AU - Oh, Sang Hun
AU - Choo, Yeon Sik
N1 - Publisher Copyright:
© 2024 National Science Museum of Korea (NSMK) and Korea National Arboretum (KNA)
PY - 2024/9/1
Y1 - 2024/9/1
N2 - Arabis stelleri DC. and A. takesimana Nakai belong to the family Brassicaceae. Arabis stelleri is widely distributed in East Asia, and A. takesimana is a Korean endemic plant. In this study, we report the complete chloroplast genomes of both species, measuring 153,577 bp for A. stelleri and 153,557 bp for A. takesimana. The plastome of A. stelleri comprises two inverted repeats (IRs) of 26,421 bp, a large single-copy (LSC) region measuring 82,705 bp, and a small single-copy (SSC) region of 18,030 bp. Whereas A. takesimana has IR regions of 26,426 bp, an LSC of 82,694 bp, and an SSC of 18,011 bp. Both the plastomes contain 131 total genes, 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 36.4% GC content. The organization and gene content of both plastomes were found to be similar to previously reported Arabis plastomes. In addition, we have tested the phylogenetic position of both the Arabis species and the relationship of the genus Arabis with other Brassicaceae members in comprehensive family-level plastome-based phylogeny. Arabis stelleri and A. takesimana are phylogenetically placed within the Arabis clade and show a close relationship to A. flagellosa, A. nipponica, A. paniculata, and A. hirsuta.
AB - Arabis stelleri DC. and A. takesimana Nakai belong to the family Brassicaceae. Arabis stelleri is widely distributed in East Asia, and A. takesimana is a Korean endemic plant. In this study, we report the complete chloroplast genomes of both species, measuring 153,577 bp for A. stelleri and 153,557 bp for A. takesimana. The plastome of A. stelleri comprises two inverted repeats (IRs) of 26,421 bp, a large single-copy (LSC) region measuring 82,705 bp, and a small single-copy (SSC) region of 18,030 bp. Whereas A. takesimana has IR regions of 26,426 bp, an LSC of 82,694 bp, and an SSC of 18,011 bp. Both the plastomes contain 131 total genes, 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 36.4% GC content. The organization and gene content of both plastomes were found to be similar to previously reported Arabis plastomes. In addition, we have tested the phylogenetic position of both the Arabis species and the relationship of the genus Arabis with other Brassicaceae members in comprehensive family-level plastome-based phylogeny. Arabis stelleri and A. takesimana are phylogenetically placed within the Arabis clade and show a close relationship to A. flagellosa, A. nipponica, A. paniculata, and A. hirsuta.
KW - Arabis stelleri
KW - Arabis takesimana
KW - Dok-do Island
KW - Ulleung-do Island
KW - chloroplast genome
UR - http://www.scopus.com/inward/record.url?scp=85191357385&partnerID=8YFLogxK
U2 - 10.1016/j.japb.2024.03.001
DO - 10.1016/j.japb.2024.03.001
M3 - Article
AN - SCOPUS:85191357385
SN - 2287-884X
VL - 17
SP - 457
EP - 463
JO - Journal of Asia-Pacific Biodiversity
JF - Journal of Asia-Pacific Biodiversity
IS - 3
ER -