Complete genome sequence of a tentative new member of the genus Badnavirus identified in Codonopsis lanceolata

Seungmo Lim; Jeong Mee Park; Suk Yoon Kwon; Hye Sun Cho; Hyun Soon Kim; Su Heon Lee; Jae Sun Moon

doi:10.1007/s00705-019-04238-5

Complete genome sequence of a tentative new member of the genus Badnavirus identified in Codonopsis lanceolata

Seungmo Lim, Jeong Mee Park, Suk Yoon Kwon, Hye Sun Cho, Hyun Soon Kim, Su Heon Lee, Jae Sun Moon

Department of Plant Medicine

Korea Research Institute of Bioscience and Biotechnology

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Abstract

High-throughput sequencing revealed a tentative new badnavirus infecting Codonopsis lanceolata, provisionally named Codonopsis vein clearing virus (CoVCV). The complete 8,112-nt CoVCV genomic DNA sequence (GenBank accession: MK044821) comprises three open reading frames (ORFs) encoding conserved domains, with typical features of badnaviruses. Additionally, BLASTn searches indicated the CoVCV genome sequence is most similar to the grapevine vein clearing virus (GVCV) genome (72% identity and 46% query coverage). Moreover, the polyprotein encoded in CoVCV ORF3 is most similar to the corresponding protein of GVCV, with 60% amino acid sequence identity (89% query coverage). These results suggest that CoVCV is a new member of the genus Badnavirus in the family Caulimoviridae.

Original language	English
Pages (from-to)	1733-1737
Number of pages	5
Journal	Archives of Virology
Volume	164
Issue number	6
DOIs	https://doi.org/10.1007/s00705-019-04238-5
State	Published - 1 Jun 2019

Access to Document

10.1007/s00705-019-04238-5

Cite this

@article{5ca122b013324604b90844e4a67d077b,

title = "Complete genome sequence of a tentative new member of the genus Badnavirus identified in Codonopsis lanceolata",

abstract = "High-throughput sequencing revealed a tentative new badnavirus infecting Codonopsis lanceolata, provisionally named Codonopsis vein clearing virus (CoVCV). The complete 8,112-nt CoVCV genomic DNA sequence (GenBank accession: MK044821) comprises three open reading frames (ORFs) encoding conserved domains, with typical features of badnaviruses. Additionally, BLASTn searches indicated the CoVCV genome sequence is most similar to the grapevine vein clearing virus (GVCV) genome (72% identity and 46% query coverage). Moreover, the polyprotein encoded in CoVCV ORF3 is most similar to the corresponding protein of GVCV, with 60% amino acid sequence identity (89% query coverage). These results suggest that CoVCV is a new member of the genus Badnavirus in the family Caulimoviridae.",

author = "Seungmo Lim and Park, {Jeong Mee} and Kwon, {Suk Yoon} and Cho, {Hye Sun} and Kim, {Hyun Soon} and Lee, {Su Heon} and Moon, {Jae Sun}",

note = "Publisher Copyright: {\textcopyright} 2019, Springer-Verlag GmbH Austria, part of Springer Nature.",

year = "2019",

month = jun,

day = "1",

doi = "10.1007/s00705-019-04238-5",

language = "English",

volume = "164",

pages = "1733--1737",

journal = "Archives of Virology",

issn = "0304-8608",

publisher = "Springer",

number = "6",

}

TY - JOUR

T1 - Complete genome sequence of a tentative new member of the genus Badnavirus identified in Codonopsis lanceolata

AU - Lim, Seungmo

AU - Park, Jeong Mee

AU - Kwon, Suk Yoon

AU - Cho, Hye Sun

AU - Kim, Hyun Soon

AU - Lee, Su Heon

AU - Moon, Jae Sun

PY - 2019/6/1

Y1 - 2019/6/1

N2 - High-throughput sequencing revealed a tentative new badnavirus infecting Codonopsis lanceolata, provisionally named Codonopsis vein clearing virus (CoVCV). The complete 8,112-nt CoVCV genomic DNA sequence (GenBank accession: MK044821) comprises three open reading frames (ORFs) encoding conserved domains, with typical features of badnaviruses. Additionally, BLASTn searches indicated the CoVCV genome sequence is most similar to the grapevine vein clearing virus (GVCV) genome (72% identity and 46% query coverage). Moreover, the polyprotein encoded in CoVCV ORF3 is most similar to the corresponding protein of GVCV, with 60% amino acid sequence identity (89% query coverage). These results suggest that CoVCV is a new member of the genus Badnavirus in the family Caulimoviridae.

AB - High-throughput sequencing revealed a tentative new badnavirus infecting Codonopsis lanceolata, provisionally named Codonopsis vein clearing virus (CoVCV). The complete 8,112-nt CoVCV genomic DNA sequence (GenBank accession: MK044821) comprises three open reading frames (ORFs) encoding conserved domains, with typical features of badnaviruses. Additionally, BLASTn searches indicated the CoVCV genome sequence is most similar to the grapevine vein clearing virus (GVCV) genome (72% identity and 46% query coverage). Moreover, the polyprotein encoded in CoVCV ORF3 is most similar to the corresponding protein of GVCV, with 60% amino acid sequence identity (89% query coverage). These results suggest that CoVCV is a new member of the genus Badnavirus in the family Caulimoviridae.

UR - http://www.scopus.com/inward/record.url?scp=85064280862&partnerID=8YFLogxK

U2 - 10.1007/s00705-019-04238-5

DO - 10.1007/s00705-019-04238-5

M3 - Article

C2 - 30953204

AN - SCOPUS:85064280862

SN - 0304-8608

VL - 164

SP - 1733

EP - 1737

JO - Archives of Virology

JF - Archives of Virology

IS - 6

ER -

Complete genome sequence of a tentative new member of the genus Badnavirus identified in Codonopsis lanceolata

Abstract

Access to Document

Other files and links

Fingerprint

Cite this