TY - JOUR
T1 - Complete genome sequence of a tentative new umbravirus isolated from Patrinia scabiosaefolia
AU - Lim, Seungmo
AU - Lee, Su Heon
AU - Moon, Jae Sun
N1 - Publisher Copyright:
© 2019, Springer-Verlag GmbH Austria, part of Springer Nature.
PY - 2019/9/1
Y1 - 2019/9/1
N2 - The complete genomic RNA sequence of a tentative new umbravirus from Patrinia scabiosaefolia, tentatively named “patrinia mild mottle virus” (PatMMoV), was determined. The genome of PatMMoV consists of 4,214 nucleotides and has a typical umbravirus genome organization with four open reading frames. BLAST searches showed that the complete nucleotide sequence of PatMMoV had the highest identity (72%; 50% query coverage) to Ixeridium yellow mottle-associated virus 2 (IxYMaV-2; an unclassified umbravirus). In addition, phylogenetic analysis and pairwise comparisons showed that PatMMoV and IxYMaV-2 were the most closely related and placed in the same clade within a group of umbraviruses. These results suggest that PatMMoV is a putative new member of the genus Umbravirus in the family Tombusviridae.
AB - The complete genomic RNA sequence of a tentative new umbravirus from Patrinia scabiosaefolia, tentatively named “patrinia mild mottle virus” (PatMMoV), was determined. The genome of PatMMoV consists of 4,214 nucleotides and has a typical umbravirus genome organization with four open reading frames. BLAST searches showed that the complete nucleotide sequence of PatMMoV had the highest identity (72%; 50% query coverage) to Ixeridium yellow mottle-associated virus 2 (IxYMaV-2; an unclassified umbravirus). In addition, phylogenetic analysis and pairwise comparisons showed that PatMMoV and IxYMaV-2 were the most closely related and placed in the same clade within a group of umbraviruses. These results suggest that PatMMoV is a putative new member of the genus Umbravirus in the family Tombusviridae.
UR - http://www.scopus.com/inward/record.url?scp=85067287870&partnerID=8YFLogxK
U2 - 10.1007/s00705-019-04312-y
DO - 10.1007/s00705-019-04312-y
M3 - Article
C2 - 31183555
AN - SCOPUS:85067287870
SN - 0304-8608
VL - 164
SP - 2375
EP - 2378
JO - Archives of Virology
JF - Archives of Virology
IS - 9
ER -