Complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea

Jee Eun Han; Seungki Lee; Dae Gwin Jeong; Sun Woo Yoon; Doo Jin Kim; Moo Seung Lee; Hye Kwon Kim; Sung Kyun Park; Ji Hyung Kim; Se Chang Park

doi:10.1016/j.jgar.2017.09.013

Complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea

Jee Eun Han
, Seungki Lee
, Dae Gwin Jeong
, Sun Woo Yoon
, Doo Jin Kim
, Moo Seung Lee
, Hye Kwon Kim
, Sung Kyun Park
, Ji Hyung Kim
, Se Chang Park

Department of Veterinary Medicine

Ministry of Environment Korea
Korea Research Institute of Bioscience and Biotechnology
Seoul National University

Research output: Contribution to journal › Comment/debate

5 Scopus citations

Abstract

Objectives This study aimed to determine the complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea. Methods Genomic DNA was sequenced using a PacBio RS II system. The obtained genome was annotated and antimicrobial resistance and virulence genes were identified. Results The sequenced genome possessed a mecA homologue (mecA1) that was almost identical to that of other oxacillin-susceptible S. sciuri strains, whereas the staphylococcal cassette chromosome mec (SCCmec) was not detected. Moreover, various antimicrobial resistance genes conferring resistance to β-lactams, aminoglycosides, phenicols, tetracycline and macrolide–lincosamide–streptogramin B (MLS_B) antimicrobials were identified. Conclusions The SNUDS-18 genome and its associated genomic data will provide important insights into the biodiversity of the S. sciuri group as well as valuable information for the control of this potential pathogen.

Original language	English
Pages (from-to)	108-110
Number of pages	3
Journal	Journal of Global Antimicrobial Resistance
Volume	11
DOIs	https://doi.org/10.1016/j.jgar.2017.09.013
State	Published - Dec 2017

Keywords

mecA1
Multidrug resistance
South Korea
Staphylococcus sciuri

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10.1016/j.jgar.2017.09.013

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@article{dc276b2b67d94706b8fb2dedc1f684d0,

title = "Complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea",

abstract = "Objectives This study aimed to determine the complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea. Methods Genomic DNA was sequenced using a PacBio RS II system. The obtained genome was annotated and antimicrobial resistance and virulence genes were identified. Results The sequenced genome possessed a mecA homologue (mecA1) that was almost identical to that of other oxacillin-susceptible S. sciuri strains, whereas the staphylococcal cassette chromosome mec (SCCmec) was not detected. Moreover, various antimicrobial resistance genes conferring resistance to β-lactams, aminoglycosides, phenicols, tetracycline and macrolide–lincosamide–streptogramin B (MLSB) antimicrobials were identified. Conclusions The SNUDS-18 genome and its associated genomic data will provide important insights into the biodiversity of the S. sciuri group as well as valuable information for the control of this potential pathogen.",

keywords = "mecA1, Multidrug resistance, South Korea, Staphylococcus sciuri",

author = "Han, \{Jee Eun\} and Seungki Lee and Jeong, \{Dae Gwin\} and Yoon, \{Sun Woo\} and Kim, \{Doo Jin\} and Lee, \{Moo Seung\} and Kim, \{Hye Kwon\} and Park, \{Sung Kyun\} and Kim, \{Ji Hyung\} and Park, \{Se Chang\}",

note = "Publisher Copyright: {\textcopyright} 2017 International Society for Chemotherapy of Infection and Cancer",

year = "2017",

month = dec,

doi = "10.1016/j.jgar.2017.09.013",

language = "English",

volume = "11",

pages = "108--110",

journal = "Journal of Global Antimicrobial Resistance",

issn = "2213-7165",

publisher = "Elsevier Ltd.",

}

TY - JOUR

T1 - Complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea

AU - Han, Jee Eun

AU - Lee, Seungki

AU - Jeong, Dae Gwin

AU - Yoon, Sun Woo

AU - Kim, Doo Jin

AU - Lee, Moo Seung

AU - Kim, Hye Kwon

AU - Park, Sung Kyun

AU - Kim, Ji Hyung

AU - Park, Se Chang

PY - 2017/12

Y1 - 2017/12

N2 - Objectives This study aimed to determine the complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea. Methods Genomic DNA was sequenced using a PacBio RS II system. The obtained genome was annotated and antimicrobial resistance and virulence genes were identified. Results The sequenced genome possessed a mecA homologue (mecA1) that was almost identical to that of other oxacillin-susceptible S. sciuri strains, whereas the staphylococcal cassette chromosome mec (SCCmec) was not detected. Moreover, various antimicrobial resistance genes conferring resistance to β-lactams, aminoglycosides, phenicols, tetracycline and macrolide–lincosamide–streptogramin B (MLSB) antimicrobials were identified. Conclusions The SNUDS-18 genome and its associated genomic data will provide important insights into the biodiversity of the S. sciuri group as well as valuable information for the control of this potential pathogen.

AB - Objectives This study aimed to determine the complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea. Methods Genomic DNA was sequenced using a PacBio RS II system. The obtained genome was annotated and antimicrobial resistance and virulence genes were identified. Results The sequenced genome possessed a mecA homologue (mecA1) that was almost identical to that of other oxacillin-susceptible S. sciuri strains, whereas the staphylococcal cassette chromosome mec (SCCmec) was not detected. Moreover, various antimicrobial resistance genes conferring resistance to β-lactams, aminoglycosides, phenicols, tetracycline and macrolide–lincosamide–streptogramin B (MLSB) antimicrobials were identified. Conclusions The SNUDS-18 genome and its associated genomic data will provide important insights into the biodiversity of the S. sciuri group as well as valuable information for the control of this potential pathogen.

KW - mecA1

KW - Multidrug resistance

KW - South Korea

KW - Staphylococcus sciuri

UR - https://www.scopus.com/pages/publications/85032015992

U2 - 10.1016/j.jgar.2017.09.013

DO - 10.1016/j.jgar.2017.09.013

M3 - Comment/debate

C2 - 28964953

AN - SCOPUS:85032015992

SN - 2213-7165

VL - 11

SP - 108

EP - 110

JO - Journal of Global Antimicrobial Resistance

JF - Journal of Global Antimicrobial Resistance

ER -

Complete genome sequence of multidrug-resistant Staphylococcus sciuri strain SNUDS-18 isolated from a farmed duck in South Korea

Abstract

Keywords

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