TY - JOUR
T1 - Description of antibiotic-producing novel bacteria paraburkholderia antibiotica sp nov and paraburkholderia polaris sp nov
AU - Dahal, Ram Hari
AU - Kim, Jungmin
AU - Chaudhary, Dhiraj Kumar
AU - Kim, Dong Uk
AU - Kim, Jaisoo
N1 - Publisher Copyright:
© 2021 The Authors.
PY - 2021
Y1 - 2021
N2 - Two white colony-forming, Gram-stain- negative, non-sporulating and motile bacteria, designated G-4-1-8T and RP-4-7T, were isolated from forest soil and Arctic soil, respectively. Both strains showed antimicrobial activity against Gram-negative pathogens (Pseudomonas aeruginosa and Escherichia coli) and could grow at a pH range of pH 4.0-11.0 (optimum, pH 7.0-9.0). Phylogenetic analyses based on their 16S rRNA gene sequences indicated that strains G-4-1-8Tand RP-4-7T formed a lineage within the family Burkholderiaceae and were clustered as members of the genus Paraburkholderia. Strain G-4- 1-8T showed the highest 16S rRNA sequence similarity to Paraburkholderia monticola JC2948T (98.1 %), while strain RP-4-7Tshowed the highest similarity to Paraburkholderia metrosideri DNBP6-1T (98.8 %). The only respiratory quinone in both strains was ubiquinone Q-8. Their principal cellular fatty acids were C16: 0, cyclo-C 17: 0, summed feature 3 (iso-C 15:0 2-OH and/or C16:1ω7c) and summed feature 8 (C18: 1 ω7c and/or C18: 1 ω6c). Their major polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and an unidentified aminophospholipid. The DNA G+C content of strains G-4-1-8T and RP-4-7T were 63.7 and 61.3 mol%, respectively, while their genome lengths were 7.44 and 9.67 Mb, respectively. The genomes of both strains showed at least 12 putative biosynthetic gene clusters. The average nucleotide identity and in silico DNA-DNA hybridization relatedness values between both strains and most closely related Paraburkholderia species were below the species threshold values. Based on a polyphasic study, these isolated strains represent novel species belonging to the genus Paraburkholderia, for which the names Paraburkholderia antibiotica sp. nov. (G-4-1-8T=KACC 21617T=NBRC 114603T) and Paraburkholderia polaris sp. nov. (RP-4-7T= KACC 21621T=NBRC 114605T) are proposed.
AB - Two white colony-forming, Gram-stain- negative, non-sporulating and motile bacteria, designated G-4-1-8T and RP-4-7T, were isolated from forest soil and Arctic soil, respectively. Both strains showed antimicrobial activity against Gram-negative pathogens (Pseudomonas aeruginosa and Escherichia coli) and could grow at a pH range of pH 4.0-11.0 (optimum, pH 7.0-9.0). Phylogenetic analyses based on their 16S rRNA gene sequences indicated that strains G-4-1-8Tand RP-4-7T formed a lineage within the family Burkholderiaceae and were clustered as members of the genus Paraburkholderia. Strain G-4- 1-8T showed the highest 16S rRNA sequence similarity to Paraburkholderia monticola JC2948T (98.1 %), while strain RP-4-7Tshowed the highest similarity to Paraburkholderia metrosideri DNBP6-1T (98.8 %). The only respiratory quinone in both strains was ubiquinone Q-8. Their principal cellular fatty acids were C16: 0, cyclo-C 17: 0, summed feature 3 (iso-C 15:0 2-OH and/or C16:1ω7c) and summed feature 8 (C18: 1 ω7c and/or C18: 1 ω6c). Their major polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and an unidentified aminophospholipid. The DNA G+C content of strains G-4-1-8T and RP-4-7T were 63.7 and 61.3 mol%, respectively, while their genome lengths were 7.44 and 9.67 Mb, respectively. The genomes of both strains showed at least 12 putative biosynthetic gene clusters. The average nucleotide identity and in silico DNA-DNA hybridization relatedness values between both strains and most closely related Paraburkholderia species were below the species threshold values. Based on a polyphasic study, these isolated strains represent novel species belonging to the genus Paraburkholderia, for which the names Paraburkholderia antibiotica sp. nov. (G-4-1-8T=KACC 21617T=NBRC 114603T) and Paraburkholderia polaris sp. nov. (RP-4-7T= KACC 21621T=NBRC 114605T) are proposed.
KW - Antimicrobial agents
KW - Antimicrobial resistance
KW - Arctic soil
KW - Forest soil
KW - Psychrotolerant
UR - http://www.scopus.com/inward/record.url?scp=85118186249&partnerID=8YFLogxK
U2 - 10.1099/ijsem.0.005060
DO - 10.1099/ijsem.0.005060
M3 - Article
C2 - 34694983
AN - SCOPUS:85118186249
SN - 1466-5026
VL - 71
JO - International Journal of Systematic and Evolutionary Microbiology
JF - International Journal of Systematic and Evolutionary Microbiology
IS - 10
M1 - 005060
ER -