Larkinella ripae sp. Nov., isolated from seashore soil

Yeon Hee Lee; Jae Jin Lee; Seung Yeo Lee; Dae Sung Lee; Myung Kyum Kim; Leonid N. Ten; Hee Young Jung

doi:10.1099/ijsem.0.002188

Larkinella ripae sp. Nov., isolated from seashore soil

Yeon Hee Lee, Jae Jin Lee, Seung Yeo Lee, Dae Sung Lee, Myung Kyum Kim, Leonid N. Ten, Hee Young Jung

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3 Scopus citations

Abstract

Strain 15J11-11^T was isolated from soil collected at the seashore and was Gram-staining-negative, short-rod-shaped, gliding and pale-pink pigmented. Flexirubin-type pigments were absent. The isolate grew at a temperature range of 15 to 30 °C and a pH range of 7 to 8. Comparative 16S rRNA gene sequence studies showed that strain 15J11-11^T belonged to the genus Larkinella within the phylum Bacteroidetes and was most closely related to Larkinella arboricola Z0532^T (95.6 %), Larkinella bovis M2TB15^T (95.4 %), and Larkinella insperata LMG 22510^T (95.2 %). The genomic DNA G+C content of strain 15J11-11^T was 53.2 mol%. The strain contained phosphatidylethanolamine, phosphatidylserine, an unidentified aminophospholipid and two unidentified polar lipids as the major polar lipids; menaquinone-7 as the predominant quinone and C_16:1ω5c, iso-C_15:0 and iso- C_17:0 3-OH as the major fatty acids which supported the affiliation of strain 15J11-11^T to the genus Larkinella. Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J11-11^T represents a novel species of the genus Larkinella, for which the name Larkinella ripae sp. nov. is proposed. The type strain is 15J11-11^T (=KCTC 42996^T=JCM 31657^T).

Original language	English
Article number	002188
Pages (from-to)	3759-3764
Number of pages	6
Journal	International Journal of Systematic and Evolutionary Microbiology
Volume	67
Issue number	10
DOIs	https://doi.org/10.1099/ijsem.0.002188
State	Published - Oct 2017

Keywords

Bacteroidetes
Larkinella
Soil bacteria

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title = "Larkinella ripae sp. Nov., isolated from seashore soil",

abstract = "Strain 15J11-11T was isolated from soil collected at the seashore and was Gram-staining-negative, short-rod-shaped, gliding and pale-pink pigmented. Flexirubin-type pigments were absent. The isolate grew at a temperature range of 15 to 30 °C and a pH range of 7 to 8. Comparative 16S rRNA gene sequence studies showed that strain 15J11-11T belonged to the genus Larkinella within the phylum Bacteroidetes and was most closely related to Larkinella arboricola Z0532T (95.6 %), Larkinella bovis M2TB15T (95.4 %), and Larkinella insperata LMG 22510T (95.2 %). The genomic DNA G+C content of strain 15J11-11T was 53.2 mol%. The strain contained phosphatidylethanolamine, phosphatidylserine, an unidentified aminophospholipid and two unidentified polar lipids as the major polar lipids; menaquinone-7 as the predominant quinone and C16:1ω5c, iso-C15:0 and iso- C17:0 3-OH as the major fatty acids which supported the affiliation of strain 15J11-11T to the genus Larkinella. Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J11-11T represents a novel species of the genus Larkinella, for which the name Larkinella ripae sp. nov. is proposed. The type strain is 15J11-11T (=KCTC 42996T=JCM 31657T).",

keywords = "Bacteroidetes, Larkinella, Soil bacteria",

author = "Lee, {Yeon Hee} and Lee, {Jae Jin} and Lee, {Seung Yeo} and Lee, {Dae Sung} and Kim, {Myung Kyum} and Ten, {Leonid N.} and Jung, {Hee Young}",

note = "Publisher Copyright: {\textcopyright} 2017 IUMS.",

year = "2017",

month = oct,

doi = "10.1099/ijsem.0.002188",

language = "English",

volume = "67",

pages = "3759--3764",

journal = "International Journal of Systematic and Evolutionary Microbiology",

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T1 - Larkinella ripae sp. Nov., isolated from seashore soil

AU - Lee, Yeon Hee

AU - Lee, Jae Jin

AU - Lee, Seung Yeo

AU - Lee, Dae Sung

AU - Kim, Myung Kyum

AU - Ten, Leonid N.

AU - Jung, Hee Young

PY - 2017/10

Y1 - 2017/10

N2 - Strain 15J11-11T was isolated from soil collected at the seashore and was Gram-staining-negative, short-rod-shaped, gliding and pale-pink pigmented. Flexirubin-type pigments were absent. The isolate grew at a temperature range of 15 to 30 °C and a pH range of 7 to 8. Comparative 16S rRNA gene sequence studies showed that strain 15J11-11T belonged to the genus Larkinella within the phylum Bacteroidetes and was most closely related to Larkinella arboricola Z0532T (95.6 %), Larkinella bovis M2TB15T (95.4 %), and Larkinella insperata LMG 22510T (95.2 %). The genomic DNA G+C content of strain 15J11-11T was 53.2 mol%. The strain contained phosphatidylethanolamine, phosphatidylserine, an unidentified aminophospholipid and two unidentified polar lipids as the major polar lipids; menaquinone-7 as the predominant quinone and C16:1ω5c, iso-C15:0 and iso- C17:0 3-OH as the major fatty acids which supported the affiliation of strain 15J11-11T to the genus Larkinella. Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J11-11T represents a novel species of the genus Larkinella, for which the name Larkinella ripae sp. nov. is proposed. The type strain is 15J11-11T (=KCTC 42996T=JCM 31657T).

AB - Strain 15J11-11T was isolated from soil collected at the seashore and was Gram-staining-negative, short-rod-shaped, gliding and pale-pink pigmented. Flexirubin-type pigments were absent. The isolate grew at a temperature range of 15 to 30 °C and a pH range of 7 to 8. Comparative 16S rRNA gene sequence studies showed that strain 15J11-11T belonged to the genus Larkinella within the phylum Bacteroidetes and was most closely related to Larkinella arboricola Z0532T (95.6 %), Larkinella bovis M2TB15T (95.4 %), and Larkinella insperata LMG 22510T (95.2 %). The genomic DNA G+C content of strain 15J11-11T was 53.2 mol%. The strain contained phosphatidylethanolamine, phosphatidylserine, an unidentified aminophospholipid and two unidentified polar lipids as the major polar lipids; menaquinone-7 as the predominant quinone and C16:1ω5c, iso-C15:0 and iso- C17:0 3-OH as the major fatty acids which supported the affiliation of strain 15J11-11T to the genus Larkinella. Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J11-11T represents a novel species of the genus Larkinella, for which the name Larkinella ripae sp. nov. is proposed. The type strain is 15J11-11T (=KCTC 42996T=JCM 31657T).

KW - Bacteroidetes

KW - Larkinella

KW - Soil bacteria

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U2 - 10.1099/ijsem.0.002188

DO - 10.1099/ijsem.0.002188

M3 - Article

C2 - 28879840

AN - SCOPUS:85031771213

SN - 1466-5026

VL - 67

SP - 3759

EP - 3764

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

IS - 10

M1 - 002188

ER -

Larkinella ripae sp. Nov., isolated from seashore soil

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