Nocardioides sambongensis sp. Nov., isolated from dokdo islands soil

Ye Ji Hwang, Jin Soo Son, Soo Yeong Lee, Yuxi He, Youngjae Jo, Jae Ho Shin, Sa Youl Ghim

Research output: Contribution to journalArticlepeer-review

3 Scopus citations

Abstract

Strain KUDC5002T was isolated from soil sampled on the Dokdo Islands, Republic of Korea. This bacterial strain was Gram stain-positive, non-motile, rod-shaped, capable of growing at 25–37°C and pH 5.0–12.0, and showed optimal growth at 30°C and pH 7.0–8.0. Strain KUDC5002T could be grown in tryptic soy broth containing less than 7.0 % NaCl (w/v). The cell width ranged from 0.5 to 0.6 µm and length ranged from 0.8 to 1.0 µm. Strain KUDC5002T was catalase-and oxidase-positive. Its genomic G+C content was 72.2 mol%. Its major fatty acids were C18: 1w9c (17.3 %), iso-C16: 0 (16.0 %) and iso-C17: 0 (11.4 %). Phylogenetic analysis, based on 16S rRNA gene sequences, showed that strain KUDC5002T belongs to the genus Nocardioides and is most closely related to strain Nocardioides humi DCY24T (97.0 %). Based on its phenotypic, phylogenetic, genetic and chemotaxonomic features, strain KUDC5002T should be considered a novel species in the genus Nocardioides, for which we have proposed the name Nocardioides sambongensis sp. nov. The type strain is KUDC5002T (=KCTC 39855T=DSM 106604T).

Original languageEnglish
Article number003689
Pages (from-to)16-22
Number of pages7
JournalInternational Journal of Systematic and Evolutionary Microbiology
Volume70
Issue number1
DOIs
StatePublished - 2020

Keywords

  • Dokdo Islands
  • Nocardioides
  • Soil bacteria

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