Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus

Fumei Zhao; Davaajargal Igori; Seungmo Lim; Ran Hee Yoo; Su Heon Lee; Jae Sun Moon

doi:10.1007/s00705-015-2553-5

Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus

Fumei Zhao, Davaajargal Igori, Seungmo Lim, Ran Hee Yoo, Su Heon Lee, Jae Sun Moon

Department of Plant Medicine

Research output: Contribution to journal › Article › peer-review

Abstract

The complete genome sequence of a member of a distinct species of the genus Carlavirus in the family Betaflexiviridae, tentatively named atractylodes mottle virus (AtrMoV), has been determined. Analysis of its genomic organization indicates that it has a single-stranded, positive-sense genomic RNA of 8866 nucleotides, excluding the poly(A) tail, and consists of six open reading frames typical of members of the genus Carlavirus. The individual open reading frames of AtrMoV show moderately low sequence similarity to those of other carlaviruses at the nucleotide and amino acid sequence levels. Pairwise comparison and phylogenetic analysis suggest that AtrMoV is most closely related to chrysanthemum virus B.

Original language	English
Pages (from-to)	2895-2898
Number of pages	4
Journal	Archives of Virology
Volume	160
Issue number	11
DOIs	https://doi.org/10.1007/s00705-015-2553-5
State	Published - 12 Aug 2015

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title = "Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus",

abstract = "The complete genome sequence of a member of a distinct species of the genus Carlavirus in the family Betaflexiviridae, tentatively named atractylodes mottle virus (AtrMoV), has been determined. Analysis of its genomic organization indicates that it has a single-stranded, positive-sense genomic RNA of 8866 nucleotides, excluding the poly(A) tail, and consists of six open reading frames typical of members of the genus Carlavirus. The individual open reading frames of AtrMoV show moderately low sequence similarity to those of other carlaviruses at the nucleotide and amino acid sequence levels. Pairwise comparison and phylogenetic analysis suggest that AtrMoV is most closely related to chrysanthemum virus B.",

author = "Fumei Zhao and Davaajargal Igori and Seungmo Lim and Yoo, {Ran Hee} and Lee, {Su Heon} and Moon, {Jae Sun}",

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AU - Yoo, Ran Hee

AU - Lee, Su Heon

AU - Moon, Jae Sun

PY - 2015/8/12

Y1 - 2015/8/12

N2 - The complete genome sequence of a member of a distinct species of the genus Carlavirus in the family Betaflexiviridae, tentatively named atractylodes mottle virus (AtrMoV), has been determined. Analysis of its genomic organization indicates that it has a single-stranded, positive-sense genomic RNA of 8866 nucleotides, excluding the poly(A) tail, and consists of six open reading frames typical of members of the genus Carlavirus. The individual open reading frames of AtrMoV show moderately low sequence similarity to those of other carlaviruses at the nucleotide and amino acid sequence levels. Pairwise comparison and phylogenetic analysis suggest that AtrMoV is most closely related to chrysanthemum virus B.

AB - The complete genome sequence of a member of a distinct species of the genus Carlavirus in the family Betaflexiviridae, tentatively named atractylodes mottle virus (AtrMoV), has been determined. Analysis of its genomic organization indicates that it has a single-stranded, positive-sense genomic RNA of 8866 nucleotides, excluding the poly(A) tail, and consists of six open reading frames typical of members of the genus Carlavirus. The individual open reading frames of AtrMoV show moderately low sequence similarity to those of other carlaviruses at the nucleotide and amino acid sequence levels. Pairwise comparison and phylogenetic analysis suggest that AtrMoV is most closely related to chrysanthemum virus B.

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Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus

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