Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean

Moon Nam; Sang Mok Kim; Leslie L. Domier; Serry Koh; Jung Kyung Moon; Hong Soo Choi; Hong Gi Kim; Jae Sun Moon; Su Heon Lee

doi:10.1007/s00705-009-0480-z

Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean

Moon Nam, Sang Mok Kim, Leslie L. Domier, Serry Koh, Jung Kyung Moon, Hong Soo Choi, Hong Gi Kim, Jae Sun Moon, Su Heon Lee

Department of Plant Medicine

Research output: Contribution to journal › Article › peer-review

24 Scopus citations

Abstract

The viral genome of soybean yellow mottle mosaic virus (SYMMV) from infected soybean (Glycine max) in Korea was cloned and sequenced. The complete monopartite single-stranded RNA genome of SYMMV consists of 4009 base pairs with six putative open reading frames and includes 5′- and 3′-untranslated regions of 39 and 229 nucleotides, respectively. The nucleotide and coat protein sequences of SYMMV share the highest sequence identity with those of cowpea mottle virus. Based on its genomic organization, its predicted amino acid sequence, and its phylogenetic relatedness to known carmoviruses, we report that SYMMV is a new member of the genus Carmovirus in the family Tombusviridae.

Original language	English
Pages (from-to)	1679-1684
Number of pages	6
Journal	Archives of Virology
Volume	154
Issue number	10
DOIs	https://doi.org/10.1007/s00705-009-0480-z
State	Published - Oct 2009

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title = "Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean",

abstract = "The viral genome of soybean yellow mottle mosaic virus (SYMMV) from infected soybean (Glycine max) in Korea was cloned and sequenced. The complete monopartite single-stranded RNA genome of SYMMV consists of 4009 base pairs with six putative open reading frames and includes 5′- and 3′-untranslated regions of 39 and 229 nucleotides, respectively. The nucleotide and coat protein sequences of SYMMV share the highest sequence identity with those of cowpea mottle virus. Based on its genomic organization, its predicted amino acid sequence, and its phylogenetic relatedness to known carmoviruses, we report that SYMMV is a new member of the genus Carmovirus in the family Tombusviridae.",

author = "Moon Nam and Kim, {Sang Mok} and Domier, {Leslie L.} and Serry Koh and Moon, {Jung Kyung} and Choi, {Hong Soo} and Kim, {Hong Gi} and Moon, {Jae Sun} and Lee, {Su Heon}",

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T1 - Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean

AU - Nam, Moon

AU - Kim, Sang Mok

AU - Domier, Leslie L.

AU - Koh, Serry

AU - Moon, Jung Kyung

AU - Choi, Hong Soo

AU - Kim, Hong Gi

AU - Moon, Jae Sun

AU - Lee, Su Heon

PY - 2009/10

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N2 - The viral genome of soybean yellow mottle mosaic virus (SYMMV) from infected soybean (Glycine max) in Korea was cloned and sequenced. The complete monopartite single-stranded RNA genome of SYMMV consists of 4009 base pairs with six putative open reading frames and includes 5′- and 3′-untranslated regions of 39 and 229 nucleotides, respectively. The nucleotide and coat protein sequences of SYMMV share the highest sequence identity with those of cowpea mottle virus. Based on its genomic organization, its predicted amino acid sequence, and its phylogenetic relatedness to known carmoviruses, we report that SYMMV is a new member of the genus Carmovirus in the family Tombusviridae.

AB - The viral genome of soybean yellow mottle mosaic virus (SYMMV) from infected soybean (Glycine max) in Korea was cloned and sequenced. The complete monopartite single-stranded RNA genome of SYMMV consists of 4009 base pairs with six putative open reading frames and includes 5′- and 3′-untranslated regions of 39 and 229 nucleotides, respectively. The nucleotide and coat protein sequences of SYMMV share the highest sequence identity with those of cowpea mottle virus. Based on its genomic organization, its predicted amino acid sequence, and its phylogenetic relatedness to known carmoviruses, we report that SYMMV is a new member of the genus Carmovirus in the family Tombusviridae.

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Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean

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