Phylogenetic lineage of Tobacco leaf curl virus in Korea and estimation of recombination events implicated in their sequence variation

Jungan Park; Hyejung Lee; Mi Kyung Kim; Hae Ryun Kwak; Chung Kyoon Auh; Kyeong yeoll Lee; Sunghan Kim; Hong Soo Choi; Sukchan Lee

doi:10.1016/j.virusres.2011.04.017

Phylogenetic lineage of Tobacco leaf curl virus in Korea and estimation of recombination events implicated in their sequence variation

Jungan Park, Hyejung Lee, Mi Kyung Kim, Hae Ryun Kwak, Chung Kyoon Auh, Kyeong yeoll Lee, Sunghan Kim, Hong Soo Choi, Sukchan Lee

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Abstract

New strains of Tobacco leaf curl virus (TbLCV) were isolated from tomato plants in four different local communities of Korea, and hence were designated TbLCV-Kr. Phylogenetic analysis of the sequences of the whole genome and of individual ORFs of these viruses indicated that they are closely related to the Tobacco leaf curl Japan virus (TbLCJV) cluster, which includes Honeysuckle yellow vein virus (HYVV), Honeysuckle yellow vein mosaic virus (HYVMV), and TbLCJV isolates. Four putative recombination events were recognized within these virus sequences, suggesting that the sequence variations observed in these viruses may be attributable to intraspecific and interspecific recombination events involving some TbLCV-Kr isolates, Papaya leaf curl virus (PaLCV), and a local isolate of Tomato yellow leaf curl virus (TYLCV).

Original language	English
Pages (from-to)	124-131
Number of pages	8
Journal	Virus Research
Volume	159
Issue number	2
DOIs	https://doi.org/10.1016/j.virusres.2011.04.017
State	Published - Aug 2011

Keywords

Begomovirus
Recombination
Rolling circle amplification (RCA)
Tobacco leaf curl disease (TYLCD)
Tobacco leaf curl virus (TbLCV)3

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1016/j.virusres.2011.04.017

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title = "Phylogenetic lineage of Tobacco leaf curl virus in Korea and estimation of recombination events implicated in their sequence variation",

abstract = "New strains of Tobacco leaf curl virus (TbLCV) were isolated from tomato plants in four different local communities of Korea, and hence were designated TbLCV-Kr. Phylogenetic analysis of the sequences of the whole genome and of individual ORFs of these viruses indicated that they are closely related to the Tobacco leaf curl Japan virus (TbLCJV) cluster, which includes Honeysuckle yellow vein virus (HYVV), Honeysuckle yellow vein mosaic virus (HYVMV), and TbLCJV isolates. Four putative recombination events were recognized within these virus sequences, suggesting that the sequence variations observed in these viruses may be attributable to intraspecific and interspecific recombination events involving some TbLCV-Kr isolates, Papaya leaf curl virus (PaLCV), and a local isolate of Tomato yellow leaf curl virus (TYLCV).",

keywords = "Begomovirus, Recombination, Rolling circle amplification (RCA), Tobacco leaf curl disease (TYLCD), Tobacco leaf curl virus (TbLCV)3",

author = "Jungan Park and Hyejung Lee and Kim, {Mi Kyung} and Kwak, {Hae Ryun} and Auh, {Chung Kyoon} and Lee, {Kyeong yeoll} and Sunghan Kim and Choi, {Hong Soo} and Sukchan Lee",

year = "2011",

month = aug,

doi = "10.1016/j.virusres.2011.04.017",

language = "English",

volume = "159",

pages = "124--131",

journal = "Virus Research",

issn = "0168-1702",

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T1 - Phylogenetic lineage of Tobacco leaf curl virus in Korea and estimation of recombination events implicated in their sequence variation

AU - Park, Jungan

AU - Lee, Hyejung

AU - Kim, Mi Kyung

AU - Kwak, Hae Ryun

AU - Auh, Chung Kyoon

AU - Lee, Kyeong yeoll

AU - Kim, Sunghan

AU - Choi, Hong Soo

AU - Lee, Sukchan

PY - 2011/8

Y1 - 2011/8

N2 - New strains of Tobacco leaf curl virus (TbLCV) were isolated from tomato plants in four different local communities of Korea, and hence were designated TbLCV-Kr. Phylogenetic analysis of the sequences of the whole genome and of individual ORFs of these viruses indicated that they are closely related to the Tobacco leaf curl Japan virus (TbLCJV) cluster, which includes Honeysuckle yellow vein virus (HYVV), Honeysuckle yellow vein mosaic virus (HYVMV), and TbLCJV isolates. Four putative recombination events were recognized within these virus sequences, suggesting that the sequence variations observed in these viruses may be attributable to intraspecific and interspecific recombination events involving some TbLCV-Kr isolates, Papaya leaf curl virus (PaLCV), and a local isolate of Tomato yellow leaf curl virus (TYLCV).

AB - New strains of Tobacco leaf curl virus (TbLCV) were isolated from tomato plants in four different local communities of Korea, and hence were designated TbLCV-Kr. Phylogenetic analysis of the sequences of the whole genome and of individual ORFs of these viruses indicated that they are closely related to the Tobacco leaf curl Japan virus (TbLCJV) cluster, which includes Honeysuckle yellow vein virus (HYVV), Honeysuckle yellow vein mosaic virus (HYVMV), and TbLCJV isolates. Four putative recombination events were recognized within these virus sequences, suggesting that the sequence variations observed in these viruses may be attributable to intraspecific and interspecific recombination events involving some TbLCV-Kr isolates, Papaya leaf curl virus (PaLCV), and a local isolate of Tomato yellow leaf curl virus (TYLCV).

KW - Begomovirus

KW - Recombination

KW - Rolling circle amplification (RCA)

KW - Tobacco leaf curl disease (TYLCD)

KW - Tobacco leaf curl virus (TbLCV)3

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U2 - 10.1016/j.virusres.2011.04.017

DO - 10.1016/j.virusres.2011.04.017

M3 - Article

C2 - 21549772

AN - SCOPUS:80051588088

SN - 0168-1702

VL - 159

SP - 124

EP - 131

JO - Virus Research

JF - Virus Research

IS - 2

ER -

Phylogenetic lineage of Tobacco leaf curl virus in Korea and estimation of recombination events implicated in their sequence variation

Abstract

Keywords

UN SDGs

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