Putative drug and vaccine target protein identification using comparative genomic analysis of KEGG annotated metabolic pathways of Mycoplasma hyopneumoniae

Dereje Damte, Joo Won Suh, Seung Jin Lee, Sileshi Belew Yohannes, Md Akil Hossain, Seung Chun Park

Research output: Contribution to journalArticlepeer-review

36 Scopus citations

Abstract

In the present study, a computational comparative and subtractive genomic/proteomic analysis aimed at the identification of putative therapeutic target and vaccine candidate proteins from Kyoto Encyclopedia of Genes and Genomes (KEGG) annotated metabolic pathways of Mycoplasma hyopneumoniae was performed for drug design and vaccine production pipelines against M.hyopneumoniae. The employed comparative genomic and metabolic pathway analysis with a predefined computational systemic workflow extracted a total of 41 annotated metabolic pathways from KEGG among which five were unique to M. hyopneumoniae. A total of 234 proteins were identified to be involved in these metabolic pathways. Although 125 non homologous and predicted essential proteins were found from the total that could serve as potential drug targets and vaccine candidates, additional prioritizing parameters characterize 21 proteins as vaccine candidate while druggability of each of the identified proteins evaluated by the DrugBank database prioritized 42 proteins suitable for drug targets.

Original languageEnglish
Pages (from-to)47-56
Number of pages10
JournalGenomics
Volume102
Issue number1
DOIs
StatePublished - Jul 2013

Keywords

  • KEGG metabolic pathways
  • Mycoplasma hyopneumoniae
  • Therapeutic targets
  • Vaccine candidate

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