The complete chloroplast genome of Lilium distichum Nakai (Liliaceae)

Yoon Jung Hwang; Sang Choon Lee; Kyunghee Kim; Beom Soon Choi; Jee Young Park; Tae Jin Yang; Ki Byung Lim

doi:10.3109/19401736.2015.1101591

The complete chloroplast genome of Lilium distichum Nakai (Liliaceae)

Yoon Jung Hwang, Sang Choon Lee, Kyunghee Kim, Beom Soon Choi, Jee Young Park, Tae Jin Yang, Ki Byung Lim

Department of Horticultural Science

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

Abstract

Lilium distichum is a native lily species in Korea, northeastern China and far eastern Russia. The complete chloroplast genome sequence of L. distichum was generated by de novo assembly using whole genome next generation sequences. The chloroplast genome of L. distichum was 152 598 bp in length and divided into four distinct regions, such as large single copy region (82 031 bp), small single copy region (17 487 bp) and a pair of inverted repeat regions (26 540 bp). The genome annotation predicted a total of 112 genes, including 78 protein-coding genes, 30 tRNA genes,and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that L. distichum is most closely related to L. superbum (Turk’s-cap lily).

Original language	English
Pages (from-to)	4633-4634
Number of pages	2
Journal	Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis
Volume	27
Issue number	6
DOIs	https://doi.org/10.3109/19401736.2015.1101591
State	Published - 1 Nov 2016

Keywords

Chloroplast
genome sequence
Lilium distichum; lily

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10.3109/19401736.2015.1101591

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abstract = "Lilium distichum is a native lily species in Korea, northeastern China and far eastern Russia. The complete chloroplast genome sequence of L. distichum was generated by de novo assembly using whole genome next generation sequences. The chloroplast genome of L. distichum was 152 598 bp in length and divided into four distinct regions, such as large single copy region (82 031 bp), small single copy region (17 487 bp) and a pair of inverted repeat regions (26 540 bp). The genome annotation predicted a total of 112 genes, including 78 protein-coding genes, 30 tRNA genes,and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that L. distichum is most closely related to L. superbum (Turk{\textquoteright}s-cap lily).",

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AU - Hwang, Yoon Jung

AU - Lee, Sang Choon

AU - Kim, Kyunghee

AU - Choi, Beom Soon

AU - Park, Jee Young

AU - Yang, Tae Jin

AU - Lim, Ki Byung

PY - 2016/11/1

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AB - Lilium distichum is a native lily species in Korea, northeastern China and far eastern Russia. The complete chloroplast genome sequence of L. distichum was generated by de novo assembly using whole genome next generation sequences. The chloroplast genome of L. distichum was 152 598 bp in length and divided into four distinct regions, such as large single copy region (82 031 bp), small single copy region (17 487 bp) and a pair of inverted repeat regions (26 540 bp). The genome annotation predicted a total of 112 genes, including 78 protein-coding genes, 30 tRNA genes,and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that L. distichum is most closely related to L. superbum (Turk’s-cap lily).

KW - Chloroplast

KW - genome sequence

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JO - Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis

JF - Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis

IS - 6

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The complete chloroplast genome of Lilium distichum Nakai (Liliaceae)

Abstract

Keywords

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