The whole chloroplast genome sequence of black nightshade plant (Solanum nigrum)

Abdur Rahim Khan; Chang Eon Park; Gun Seok Park; Young Jin Seo; Jai Hyun So; Jae Ho Shin

doi:10.3109/19401736.2015.1115494

The whole chloroplast genome sequence of black nightshade plant (Solanum nigrum)

Abdur Rahim Khan, Chang Eon Park, Gun Seok Park, Young Jin Seo, Jai Hyun So, Jae Ho Shin

School of Applied Bioscience

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Abstract

In this study, complete chloroplast genome of Solanum nigrum, a wild relative of potato and tomato being important for its medicinal features, was sequenced. The genome size is 154 671 bp in length, with 40% GC content. A pair of inverted repeats, IRa and IRSb, were separated by a large single-copy region and a small single-copy region of 82 315 bp and 33 411 bp, respectively. The genome harbored 73 protein-coding genes, 36 tRNA genes, and three rRNA genes. The evolutionary relationships in our phylogenetic analysis revealed that S. nigrum is closer to S. tuberosum when compared with those of known relatives’ species belonging to Solanum genus.

Original language	English
Pages (from-to)	169-170
Number of pages	2
Journal	Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis
Volume	28
Issue number	2
DOIs	https://doi.org/10.3109/19401736.2015.1115494
State	Published - 4 Mar 2017

Keywords

Complete chloroplast genome
phylogeny
Solanum nigrum

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10.3109/19401736.2015.1115494

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abstract = "In this study, complete chloroplast genome of Solanum nigrum, a wild relative of potato and tomato being important for its medicinal features, was sequenced. The genome size is 154 671 bp in length, with 40% GC content. A pair of inverted repeats, IRa and IRSb, were separated by a large single-copy region and a small single-copy region of 82 315 bp and 33 411 bp, respectively. The genome harbored 73 protein-coding genes, 36 tRNA genes, and three rRNA genes. The evolutionary relationships in our phylogenetic analysis revealed that S. nigrum is closer to S. tuberosum when compared with those of known relatives{\textquoteright} species belonging to Solanum genus.",

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AU - Shin, Jae Ho

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The whole chloroplast genome sequence of black nightshade plant (Solanum nigrum)

Abstract

Keywords

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