Three-dimensional shape modeling and analysis of brain structures

Jaeil Kim; Maria Del Carmen Valdés Hernández; Jinah Park

doi:10.3791/59172

Three-dimensional shape modeling and analysis of brain structures

Jaeil Kim
, Maria Del Carmen Valdés Hernández
, Jinah Park

University of Edinburgh
Korea Advanced Institute of Science and Technology

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Abstract

Statistical shape analysis of brain structures has been used to investigate the association between their structural changes and pathological processes. We have developed a software package for accurate and robust shape modeling and group-wise analysis. Here, we introduce an pipeline for the shape analysis, from individual 3D shape modeling to quantitative group shape analysis. We also describe the pre-processing and segmentation steps using open software packages. This practical guide would help researchers save time and effort in 3D shape analysis on brain structures.

Original language	English
Article number	e59172
Journal	Journal of Visualized Experiments
Volume	2019
Issue number	153
DOIs	https://doi.org/10.3791/59172
State	Published - Nov 2019

Keywords

Brain
Deformable Model
Hippocampus
Issue 153
Morphology
Neuroscience
Shape Modeling
Statistical Shape Analysis

Access to Document

10.3791/59172

Cite this

@article{8331d981292544b88a7537512a5c0e04,

title = "Three-dimensional shape modeling and analysis of brain structures",

abstract = "Statistical shape analysis of brain structures has been used to investigate the association between their structural changes and pathological processes. We have developed a software package for accurate and robust shape modeling and group-wise analysis. Here, we introduce an pipeline for the shape analysis, from individual 3D shape modeling to quantitative group shape analysis. We also describe the pre-processing and segmentation steps using open software packages. This practical guide would help researchers save time and effort in 3D shape analysis on brain structures.",

keywords = "Brain, Deformable Model, Hippocampus, Issue 153, Morphology, Neuroscience, Shape Modeling, Statistical Shape Analysis",

author = "Jaeil Kim and \{Vald{\'e}s Hern{\'a}ndez\}, \{Maria Del Carmen\} and Jinah Park",

note = "Publisher Copyright: {\textcopyright} 2019 Journal of Visualized Experiments.",

year = "2019",

month = nov,

doi = "10.3791/59172",

language = "English",

volume = "2019",

journal = "Journal of Visualized Experiments",

issn = "1940-087X",

publisher = "MYJoVE Corporation",

number = "153",

}

TY - JOUR

T1 - Three-dimensional shape modeling and analysis of brain structures

AU - Kim, Jaeil

AU - Valdés Hernández, Maria Del Carmen

AU - Park, Jinah

PY - 2019/11

Y1 - 2019/11

N2 - Statistical shape analysis of brain structures has been used to investigate the association between their structural changes and pathological processes. We have developed a software package for accurate and robust shape modeling and group-wise analysis. Here, we introduce an pipeline for the shape analysis, from individual 3D shape modeling to quantitative group shape analysis. We also describe the pre-processing and segmentation steps using open software packages. This practical guide would help researchers save time and effort in 3D shape analysis on brain structures.

AB - Statistical shape analysis of brain structures has been used to investigate the association between their structural changes and pathological processes. We have developed a software package for accurate and robust shape modeling and group-wise analysis. Here, we introduce an pipeline for the shape analysis, from individual 3D shape modeling to quantitative group shape analysis. We also describe the pre-processing and segmentation steps using open software packages. This practical guide would help researchers save time and effort in 3D shape analysis on brain structures.

KW - Brain

KW - Deformable Model

KW - Hippocampus

KW - Issue 153

KW - Morphology

KW - Neuroscience

KW - Shape Modeling

KW - Statistical Shape Analysis

UR - https://www.scopus.com/pages/publications/85076091447

U2 - 10.3791/59172

DO - 10.3791/59172

M3 - Article

C2 - 31789315

AN - SCOPUS:85076091447

SN - 1940-087X

VL - 2019

JO - Journal of Visualized Experiments

JF - Journal of Visualized Experiments

IS - 153

M1 - e59172

ER -

Three-dimensional shape modeling and analysis of brain structures

Abstract

Keywords

Access to Document

Other files and links

Cite this